For any questions, feature requests, or bug reports, please leave a comment with your email address at the bottom of this page or create an issue on https://github.com/tingzhao/neutube. You can also contact Ting Zhao directly by email. We will answer or address it promptly.
Great news! We have released our software for reconstructing neurons from bright-field images!
Contents
Build Version 1.0z (2018.07.12)
SHA1(neuTube_1.0z.2018.07.12.zip)= ea0f58221cfb56c0a34ce48c689d3f926de64f4d
SHA1(neuTube_win64.2018.07.12.zip)= 284851ac7e891d5dbbe454656760c1701b405509
Source code
https://github.com/tingzhao/neutube
The branch to clone is neutube.
Test Image
Example Image With One Reconstructed SWC
2014 x 4890 x 99 Tiff Image, ~521 MB, Voxel Size 0.103783 x 0.103783 x 0.523817 µm
CA1 neuron imaged with Zeiss LSM confocal microscope
Detailed image acquisition parameters can be found in
Kim J, Zhao T, Petralia RS, Yu Y, Peng H, Myers E, Magee JC (2012) mGRASP enables mapping mammalian synaptic connectivity with light microscopy. Nat Methods 9:96–102
Qt SDK and Compiler for Windows Build
From http://tver-soft.org/qt64
SHA1(qt-4.8.7-x64-mingw510r0-seh.exe)= a7beaad7f1d02b75e87323c76b748775b6ae3f0a
Old Versions
Build Version 1.0z (2017.01.09)
SHA1(neuTube_1.0z.2017.01.09.zip)= 53c9132470b0e5cb2a0cc5e228f6045fc31633f5
SHA1(neuTube_win64_1.0z_2017.01.10.zip)= 4cdb683f2e1df8438c8c5b0c47e535ac846a396f
Build Version 1.0z (2016.06.09)
SHA1(neuTube1.0z.2016.zip)= 63394e0394af1eb351c4b8841d4a5a276874548a
SHA1(neuTube_win64_1.0z.2016.zip)= 6a9aa25033ebe3a9f466c3185333951aa1e3ca73
Build Version 1.0z (2015.10.14)
SHA1(neuTube1.0z.zip)= 0f8dec2ac2b87d5f349588cef246f516d1c3d095
SHA1(neuTube_win64_1.0z.zip)= e2b5a4b0a3d7c4181cbd9d6135d18ff6e0064cce
Build Version 1.0x (2015.01.30)
SHA1(neuTube1.0x.zip)= a0b7a0163e3891fbe2b923545a3ac6545ed1ad63
SHA1(neuTube_win64_1.0x.zip)= 046ea1a39d2c1fee5c9f6aac22f94472bf9ec0a0
Build Version 1.0 (2014.06.03)
SHA1(neuTube.app.zip)= e4ddd58030253b747bc75eda8a6cffcb40e9aaf7
SHA1(neutube_1.0_win64.zip)= fd894ca4adb39adf8e7bb49f47c14cd4eab70cc5
SHA1(neuTube1_0_fedora.tar.gz)= 373acd1e14e8da168ef0233f9cb32ad1654e362c